VPS41_HUMAN
Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act in part as a core component of the putative HOPS endosomal tethering complex is proposed to be involved in the Rab5-to-Rab7 endosome conversion probably implicating MON1A/B, and via binding SNAREs and SNARE complexes to mediate tethering and docking events during SNARE-mediated membrane fusion. The HOPS complex is proposed to be recruited to Rab7 on the late endosomal membrane and to regulate late endocytic, phagocytic and autophagic traffic towards lysosomes (PubMed). Involved in homotypic vesicle fusions between late endosomes and in heterotypic fusions between late endosomes and lysosomes implicated in degradation of endocytosed cargo (PubMed, PubMed, PubMed, PubMed). Required for fusion of autophagosomes with lysosomes (PubMed). Links the HOPS complex to endosomal Rab7 via its association with RILP and to lysosomal membranes via its association with ARL8B, suggesting that these interactions may bring the compartments to close proximity for fusion (PubMed, PubMed, PubMed). Involved in the direct trans-Golgi network to late endosomes transport of lysosomal membrane proteins independently of HOPS (PubMed). Involved in sorting to the regulated secretory pathway presumably implicating the AP-3 adaptor complex . May play a role in HOPS-independent function in the regulated secretory pathway (PubMed). [View more on UniProt]
To display all evidence describing the interaction with a partner, click on the protein name left to the bars.
Position | Amino acid | Mutation | Disease | Overlap with binding region |
---|---|---|---|---|
285 | Ser | Pro | Spinocerebellarataxia,autosomalrecessive,29(SCAR29) | - |
791 | Cys | Phe | Spinocerebellarataxia,autosomalrecessive,29(SCAR29) | - |
No annotated instance was found. To search for linear motifs, use the ELM prediction server.
Molecular function
Term | Name | % | Distance from the top of the tree | Annotated in VPS41_HUMAN |
---|---|---|---|---|
GO:0046872 | metal ion binding | 30.0000 | 4 | yes |
GO:0008017 | microtubule binding | 15.0000 | 5 | yes |
GO:0015631 | tubulin binding | 15.0000 | 4 | yes |
Biological process
Term | Name | % | Distance from top the of the tree | Annotated in VPS41_HUMAN |
---|---|---|---|---|
GO:0008104 | protein localization | 80.0000 | 4 | yes |
GO:0015031 | protein transport | 80.0000 | 4 | yes |
GO:0071702 | organic substance transport | 80.0000 | 4 | yes |
GO:0071705 | nitrogen compound transport | 80.0000 | 4 | yes |
GO:0016192 | vesicle-mediated transport | 75.0000 | 4 | yes |
GO:0006886 | intracellular protein transport | 70.0000 | 4 | yes |
GO:0006996 | organelle organization | 70.0000 | 4 | yes |
GO:0007034 | vacuolar transport | 65.0000 | 4 | yes |
GO:0007041 | lysosomal transport | 60.0000 | 5 | yes |
GO:0008333 | endosome to lysosome transport | 60.0000 | 5 | yes |
GO:0016050 | vesicle organization | 50.0000 | 5 | yes |
GO:0048284 | organelle fusion | 45.0000 | 5 | yes |
GO:0061024 | membrane organization | 45.0000 | 4 | yes |
GO:0006906 | vesicle fusion | 35.0000 | 6 | yes |
GO:0061025 | membrane fusion | 35.0000 | 5 | yes |
GO:0090174 | organelle membrane fusion | 35.0000 | 6 | yes |
GO:0033365 | protein localization to organelle | 30.0000 | 5 | yes |
GO:0043933 | protein-containing complex organization | 30.0000 | 4 | no |
GO:0016197 | endosomal transport | 30.0000 | 4 | no |
GO:0009893 | positive regulation of metabolic process | 30.0000 | 4 | no |
GO:0009966 | regulation of signal transduction | 30.0000 | 4 | no |
GO:0010604 | positive regulation of macromolecule metabolic process | 30.0000 | 5 | no |
GO:0010646 | regulation of cell communication | 30.0000 | 4 | no |
GO:0048522 | positive regulation of cellular process | 30.0000 | 4 | no |
GO:0051171 | regulation of nitrogen compound metabolic process | 30.0000 | 4 | no |
GO:0051173 | positive regulation of nitrogen compound metabolic process | 30.0000 | 5 | no |
GO:0060255 | regulation of macromolecule metabolic process | 30.0000 | 4 | no |
GO:0080090 | regulation of primary metabolic process | 30.0000 | 4 | no |
GO:0048523 | negative regulation of cellular process | 30.0000 | 4 | no |
GO:0016236 | macroautophagy | 25.0000 | 4 | yes |
GO:0034058 | endosomal vesicle fusion | 25.0000 | 7 | yes |
GO:0072594 | establishment of protein localization to organelle | 25.0000 | 4 | yes |
GO:0051128 | regulation of cellular component organization | 25.0000 | 4 | no |
GO:0022607 | cellular component assembly | 25.0000 | 4 | no |
GO:0009894 | regulation of catabolic process | 25.0000 | 4 | no |
GO:0032880 | regulation of protein localization | 25.0000 | 5 | no |
GO:0042176 | regulation of protein catabolic process | 25.0000 | 5 | no |
GO:0051246 | regulation of protein metabolic process | 25.0000 | 5 | no |
GO:0051247 | positive regulation of protein metabolic process | 25.0000 | 6 | no |
GO:0060341 | regulation of cellular localization | 25.0000 | 4 | no |
GO:0007033 | vacuole organization | 25.0000 | 5 | no |
GO:0010648 | negative regulation of cell communication | 25.0000 | 5 | no |
GO:0023057 | negative regulation of signaling | 25.0000 | 4 | no |
GO:0051049 | regulation of transport | 25.0000 | 4 | no |
GO:0006605 | protein targeting | 20.0000 | 5 | yes |
GO:0006623 | protein targeting to vacuole | 20.0000 | 5 | yes |
GO:0048193 | Golgi vesicle transport | 20.0000 | 5 | yes |
GO:0072665 | protein localization to vacuole | 20.0000 | 6 | yes |
GO:0072666 | establishment of protein localization to vacuole | 20.0000 | 5 | yes |
GO:1902774 | late endosome to lysosome transport | 15.0000 | 6 | yes |
GO:0009267 | cellular response to starvation | 10.0000 | 4 | yes |
GO:0031667 | response to nutrient levels | 10.0000 | 4 | yes |
GO:0031669 | cellular response to nutrient levels | 10.0000 | 4 | yes |
Disease
Term | Name | % | Distance from top the of the tree | Annotated in VPS41_HUMAN |
---|---|---|---|---|
DOID:10595 | Charcot-Marie-Tooth disease | 10.0000 | 6 | no |
DOID:440 | neuromuscular disease | 10.0000 | 5 | no |
DOID:574 | peripheral nervous system disease | 10.0000 | 3 | no |
DOID:870 | neuropathy | 10.0000 | 4 | no |
Uniprot ID | Details | Highest evidence | Localizing into PSD | HPA (protein expression in neurons) |
---|---|---|---|---|
VPS18_HUMAN | [view entry] [view interactions] | Low throughput | yes | no |
SPE39_HUMAN | [view interactions] | Low throughput | no | yes |
VPS11_HUMAN | [view entry] [view interactions] | Low throughput | yes | yes |
VP33A_HUMAN | [view entry] [view interactions] | Low throughput | yes | no |
VP33B_HUMAN | [view interactions] | Low throughput | no | yes |
STX17_HUMAN | [view interactions] | Low throughput | no | yes |
VPS41_HUMAN | [view entry] [view interactions] | Low throughput | yes | yes |
PKHM1_HUMAN | [view interactions] | Low throughput | no | yes |
ARL8B_HUMAN | [view interactions] | Low throughput | no | yes |
MON1B_HUMAN | [view interactions] | Low throughput | no | yes |
RILP_HUMAN | [view interactions] | Low throughput | no | no |
AP3D1_HUMAN | [view entry] [view interactions] | Low throughput | yes | no |
Z512B_HUMAN | [view interactions] | High throughput | no | yes |
TCAL4_HUMAN | [view interactions] | High throughput | no | no |
KDM5C_HUMAN | [view interactions] | High throughput | no | no |
VPS16_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
TGFA1_HUMAN | [view interactions] | High throughput | no | no |
BABA1_HUMAN | [view interactions] | High throughput | no | yes |
DDX41_HUMAN | [view interactions] | High throughput | no | yes |
MAX_HUMAN | [view interactions] | High throughput | no | yes |
SOSB1_HUMAN | [view interactions] | High throughput | no | yes |
XPO7_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
VPS39_HUMAN | [view entry] [view interactions] | High throughput | yes | no |
RAB7A_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
H2B2C_HUMAN | [view interactions] | High throughput | no | no |
UBE2U_HUMAN | [view interactions] | High throughput | no | no |
ESR2_HUMAN | [view interactions] | High throughput | no | no |
HS90B_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
HOOK1_HUMAN | [view interactions] | High throughput | no | no |
HOOK2_HUMAN | [view interactions] | High throughput | no | yes |
HOOK3_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
AKTIP_HUMAN | [view interactions] | High throughput | no | yes |
HS90A_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
EED_HUMAN | [view interactions] | High throughput | no | yes |
CT55_HUMAN | [view interactions] | High throughput | no | no |
F111B_HUMAN | [view interactions] | High throughput | no | no |
CLCB_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
TCPR2_HUMAN | [view interactions] | High throughput | no | yes |
HNRPL_HUMAN | [view interactions] | High throughput | no | yes |
ZUP1_HUMAN | [view interactions] | High throughput | no | yes |
VIR_HUMAN | [view interactions] | High throughput | no | yes |
PRC1_HUMAN | [view interactions] | High throughput | no | yes |
CTDS2_HUMAN | [view interactions] | High throughput | no | yes |
BICD2_HUMAN | [view interactions] | High throughput | no | yes |
GGTL1_HUMAN | [view interactions] | High throughput | no | no |
UBXN6_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
INF2_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
ST1C4_HUMAN | [view interactions] | High throughput | no | no |
RFXK_HUMAN | [view interactions] | High throughput | no | yes |
PLBL1_HUMAN | [view interactions] | High throughput | no | no |
D2HDH_HUMAN | [view interactions] | High throughput | no | no |
EFMT3_HUMAN | [view interactions] | High throughput | no | no |
CIA2A_HUMAN | [view interactions] | High throughput | no | yes |
TRI35_HUMAN | [view interactions] | High throughput | no | yes |
MTU1_HUMAN | [view interactions] | High throughput | no | no |
PKHG7_HUMAN | [view interactions] | High throughput | no | no |
SNX27_HUMAN | [view entry] [view interactions] | High throughput | yes | no |
RBM25_HUMAN | [view interactions] | High throughput | no | yes |
PR40A_HUMAN | [view interactions] | High throughput | no | yes |
PTAR1_HUMAN | [view interactions] | High throughput | no | yes |
FITM2_HUMAN | [view interactions] | High throughput | no | no |
ATG12_HUMAN | [view interactions] | High throughput | no | yes |
SPRNG_HUMAN | [view interactions] | High throughput | no | yes |
ATG7_HUMAN | [view interactions] | High throughput | no | yes |
ATG10_HUMAN | [view interactions] | High throughput | no | yes |
A4_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
UTP20_HUMAN | [view interactions] | High throughput | no | no |
XRCC4_HUMAN | [view interactions] | High throughput | no | yes |
VTI1A_HUMAN | [view interactions] | Computational | no | yes |
RAB7B_HUMAN | [view interactions] | Computational | no | no |
VTI1B_HUMAN | [view entry] [view interactions] | Computational | yes | yes |
RAB9A_HUMAN | [view interactions] | Computational | no | yes |
VPS8_HUMAN | [view entry] [view interactions] | Computational | yes | yes |
RAB9B_HUMAN | [view interactions] | Computational | no | yes |