Features Interactions Isoform Disease Linear motifs Fingerprint Network All partners

VPS41_HUMAN

Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act in part as a core component of the putative HOPS endosomal tethering complex is proposed to be involved in the Rab5-to-Rab7 endosome conversion probably implicating MON1A/B, and via binding SNAREs and SNARE complexes to mediate tethering and docking events during SNARE-mediated membrane fusion. The HOPS complex is proposed to be recruited to Rab7 on the late endosomal membrane and to regulate late endocytic, phagocytic and autophagic traffic towards lysosomes (PubMed). Involved in homotypic vesicle fusions between late endosomes and in heterotypic fusions between late endosomes and lysosomes implicated in degradation of endocytosed cargo (PubMed, PubMed, PubMed, PubMed). Required for fusion of autophagosomes with lysosomes (PubMed). Links the HOPS complex to endosomal Rab7 via its association with RILP and to lysosomal membranes via its association with ARL8B, suggesting that these interactions may bring the compartments to close proximity for fusion (PubMed, PubMed, PubMed). Involved in the direct trans-Golgi network to late endosomes transport of lysosomal membrane proteins independently of HOPS (PubMed). Involved in sorting to the regulated secretory pathway presumably implicating the AP-3 adaptor complex . May play a role in HOPS-independent function in the regulated secretory pathway (PubMed). [View more on UniProt]

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Position Amino acid Mutation Disease Overlap with binding region
285 Ser Pro Spinocerebellarataxia,autosomalrecessive,29(SCAR29) -
791 Cys Phe Spinocerebellarataxia,autosomalrecessive,29(SCAR29) -

No annotated instance was found. To search for linear motifs, use the ELM prediction server.

Molecular function

Term Name % Distance from the top of the tree Annotated in VPS41_HUMAN
GO:0046872 metal ion binding 30.0000 4 yes
GO:0008017 microtubule binding 15.0000 5 yes
GO:0015631 tubulin binding 15.0000 4 yes

Biological process

Term Name % Distance from top the of the tree Annotated in VPS41_HUMAN
GO:0008104 protein localization 80.0000 4 yes
GO:0015031 protein transport 80.0000 4 yes
GO:0071702 organic substance transport 80.0000 4 yes
GO:0071705 nitrogen compound transport 80.0000 4 yes
GO:0016192 vesicle-mediated transport 75.0000 4 yes
GO:0006886 intracellular protein transport 70.0000 4 yes
GO:0006996 organelle organization 70.0000 4 yes
GO:0007034 vacuolar transport 65.0000 4 yes
GO:0007041 lysosomal transport 60.0000 5 yes
GO:0008333 endosome to lysosome transport 60.0000 5 yes
GO:0016050 vesicle organization 50.0000 5 yes
GO:0048284 organelle fusion 45.0000 5 yes
GO:0061024 membrane organization 45.0000 4 yes
GO:0006906 vesicle fusion 35.0000 6 yes
GO:0061025 membrane fusion 35.0000 5 yes
GO:0090174 organelle membrane fusion 35.0000 6 yes
GO:0033365 protein localization to organelle 30.0000 5 yes
GO:0043933 protein-containing complex organization 30.0000 4 no
GO:0016197 endosomal transport 30.0000 4 no
GO:0009893 positive regulation of metabolic process 30.0000 4 no
GO:0009966 regulation of signal transduction 30.0000 4 no
GO:0010604 positive regulation of macromolecule metabolic process 30.0000 5 no
GO:0010646 regulation of cell communication 30.0000 4 no
GO:0048522 positive regulation of cellular process 30.0000 4 no
GO:0051171 regulation of nitrogen compound metabolic process 30.0000 4 no
GO:0051173 positive regulation of nitrogen compound metabolic process 30.0000 5 no
GO:0060255 regulation of macromolecule metabolic process 30.0000 4 no
GO:0080090 regulation of primary metabolic process 30.0000 4 no
GO:0048523 negative regulation of cellular process 30.0000 4 no
GO:0016236 macroautophagy 25.0000 4 yes
GO:0034058 endosomal vesicle fusion 25.0000 7 yes
GO:0072594 establishment of protein localization to organelle 25.0000 4 yes
GO:0051128 regulation of cellular component organization 25.0000 4 no
GO:0022607 cellular component assembly 25.0000 4 no
GO:0009894 regulation of catabolic process 25.0000 4 no
GO:0032880 regulation of protein localization 25.0000 5 no
GO:0042176 regulation of protein catabolic process 25.0000 5 no
GO:0051246 regulation of protein metabolic process 25.0000 5 no
GO:0051247 positive regulation of protein metabolic process 25.0000 6 no
GO:0060341 regulation of cellular localization 25.0000 4 no
GO:0007033 vacuole organization 25.0000 5 no
GO:0010648 negative regulation of cell communication 25.0000 5 no
GO:0023057 negative regulation of signaling 25.0000 4 no
GO:0051049 regulation of transport 25.0000 4 no
GO:0006605 protein targeting 20.0000 5 yes
GO:0006623 protein targeting to vacuole 20.0000 5 yes
GO:0048193 Golgi vesicle transport 20.0000 5 yes
GO:0072665 protein localization to vacuole 20.0000 6 yes
GO:0072666 establishment of protein localization to vacuole 20.0000 5 yes
GO:1902774 late endosome to lysosome transport 15.0000 6 yes
GO:0009267 cellular response to starvation 10.0000 4 yes
GO:0031667 response to nutrient levels 10.0000 4 yes
GO:0031669 cellular response to nutrient levels 10.0000 4 yes

Disease

Term Name % Distance from top the of the tree Annotated in VPS41_HUMAN
DOID:10595 Charcot-Marie-Tooth disease 10.0000 6 no
DOID:440 neuromuscular disease 10.0000 5 no
DOID:574 peripheral nervous system disease 10.0000 3 no
DOID:870 neuropathy 10.0000 4 no
Uniprot ID Details Highest evidence Localizing into PSD HPA (protein expression in neurons)
VPS18_HUMAN [view entry] [view interactions] Low throughput yes no
SPE39_HUMAN [view interactions] Low throughput no yes
VPS11_HUMAN [view entry] [view interactions] Low throughput yes yes
VP33A_HUMAN [view entry] [view interactions] Low throughput yes no
VP33B_HUMAN [view interactions] Low throughput no yes
STX17_HUMAN [view interactions] Low throughput no yes
VPS41_HUMAN [view entry] [view interactions] Low throughput yes yes
PKHM1_HUMAN [view interactions] Low throughput no yes
ARL8B_HUMAN [view interactions] Low throughput no yes
MON1B_HUMAN [view interactions] Low throughput no yes
RILP_HUMAN [view interactions] Low throughput no no
AP3D1_HUMAN [view entry] [view interactions] Low throughput yes no
Z512B_HUMAN [view interactions] High throughput no yes
TCAL4_HUMAN [view interactions] High throughput no no
KDM5C_HUMAN [view interactions] High throughput no no
VPS16_HUMAN [view entry] [view interactions] High throughput yes yes
TGFA1_HUMAN [view interactions] High throughput no no
BABA1_HUMAN [view interactions] High throughput no yes
DDX41_HUMAN [view interactions] High throughput no yes
MAX_HUMAN [view interactions] High throughput no yes
SOSB1_HUMAN [view interactions] High throughput no yes
XPO7_HUMAN [view entry] [view interactions] High throughput yes yes
VPS39_HUMAN [view entry] [view interactions] High throughput yes no
RAB7A_HUMAN [view entry] [view interactions] High throughput yes yes
H2B2C_HUMAN [view interactions] High throughput no no
UBE2U_HUMAN [view interactions] High throughput no no
ESR2_HUMAN [view interactions] High throughput no no
HS90B_HUMAN [view entry] [view interactions] High throughput yes yes
HOOK1_HUMAN [view interactions] High throughput no no
HOOK2_HUMAN [view interactions] High throughput no yes
HOOK3_HUMAN [view entry] [view interactions] High throughput yes yes
AKTIP_HUMAN [view interactions] High throughput no yes
HS90A_HUMAN [view entry] [view interactions] High throughput yes yes
EED_HUMAN [view interactions] High throughput no yes
CT55_HUMAN [view interactions] High throughput no no
F111B_HUMAN [view interactions] High throughput no no
CLCB_HUMAN [view entry] [view interactions] High throughput yes yes
TCPR2_HUMAN [view interactions] High throughput no yes
HNRPL_HUMAN [view interactions] High throughput no yes
ZUP1_HUMAN [view interactions] High throughput no yes
VIR_HUMAN [view interactions] High throughput no yes
PRC1_HUMAN [view interactions] High throughput no yes
CTDS2_HUMAN [view interactions] High throughput no yes
BICD2_HUMAN [view interactions] High throughput no yes
GGTL1_HUMAN [view interactions] High throughput no no
UBXN6_HUMAN [view entry] [view interactions] High throughput yes yes
INF2_HUMAN [view entry] [view interactions] High throughput yes yes
ST1C4_HUMAN [view interactions] High throughput no no
RFXK_HUMAN [view interactions] High throughput no yes
PLBL1_HUMAN [view interactions] High throughput no no
D2HDH_HUMAN [view interactions] High throughput no no
EFMT3_HUMAN [view interactions] High throughput no no
CIA2A_HUMAN [view interactions] High throughput no yes
TRI35_HUMAN [view interactions] High throughput no yes
MTU1_HUMAN [view interactions] High throughput no no
PKHG7_HUMAN [view interactions] High throughput no no
SNX27_HUMAN [view entry] [view interactions] High throughput yes no
RBM25_HUMAN [view interactions] High throughput no yes
PR40A_HUMAN [view interactions] High throughput no yes
PTAR1_HUMAN [view interactions] High throughput no yes
FITM2_HUMAN [view interactions] High throughput no no
ATG12_HUMAN [view interactions] High throughput no yes
SPRNG_HUMAN [view interactions] High throughput no yes
ATG7_HUMAN [view interactions] High throughput no yes
ATG10_HUMAN [view interactions] High throughput no yes
A4_HUMAN [view entry] [view interactions] High throughput yes yes
UTP20_HUMAN [view interactions] High throughput no no
XRCC4_HUMAN [view interactions] High throughput no yes
VTI1A_HUMAN [view interactions] Computational no yes
RAB7B_HUMAN [view interactions] Computational no no
VTI1B_HUMAN [view entry] [view interactions] Computational yes yes
RAB9A_HUMAN [view interactions] Computational no yes
VPS8_HUMAN [view entry] [view interactions] Computational yes yes
RAB9B_HUMAN [view interactions] Computational no yes