VPS16_HUMAN
Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes which are proposed to be involved in the Rab5-to-Rab7 endosome conversion probably implicating MON1A/B, and via binding SNAREs and SNARE complexes to mediate tethering and docking events during SNARE-mediated membrane fusion. The HOPS complex is proposed to be recruited to Rab7 on the late endosomal membrane and to regulate late endocytic, phagocytic and autophagic traffic towards lysosomes. The CORVET complex is proposed to function as a Rab5 effector to mediate early endosome fusion probably in specific endosome subpopulations (PubMed, PubMed, PubMed, PubMed, PubMed). Required for recruitment of VPS33A to the HOPS complex (PubMed). Required for fusion of endosomes and autophagosomes with lysosomes; the function is dependent on its association with VPS33A but not VPS33B (PubMed). The function in autophagosome-lysosome fusion implicates STX17 but not UVRAG (PubMed). [View more on UniProt]
To display all evidence describing the interaction with a partner, click on the protein name left to the bars.
Position | Amino acid | Mutation | Disease | Overlap with binding region |
---|---|---|---|---|
52 | Asn | Lys | Dystonia30(DYT30) | - |
No annotated instance was found. To search for linear motifs, use the ELM prediction server.
Molecular function
Term | Name | % | Distance from the top of the tree | Annotated in VPS16_HUMAN |
---|---|---|---|---|
GO:0017076 | purine nucleotide binding | 21.0526 | 4 | no |
GO:0032555 | purine ribonucleotide binding | 21.0526 | 4 | no |
GO:0035639 | purine ribonucleoside triphosphate binding | 21.0526 | 4 | no |
GO:0003779 | actin binding | 13.1579 | 4 | yes |
Biological process
Term | Name | % | Distance from top the of the tree | Annotated in VPS16_HUMAN |
---|---|---|---|---|
GO:0008104 | protein localization | 63.1579 | 4 | yes |
GO:0015031 | protein transport | 60.5263 | 4 | yes |
GO:0071702 | organic substance transport | 60.5263 | 4 | yes |
GO:0071705 | nitrogen compound transport | 60.5263 | 4 | yes |
GO:0006996 | organelle organization | 55.2632 | 4 | yes |
GO:0006886 | intracellular protein transport | 52.6316 | 4 | yes |
GO:0016192 | vesicle-mediated transport | 42.1053 | 4 | yes |
GO:0048522 | positive regulation of cellular process | 36.8421 | 4 | no |
GO:0010646 | regulation of cell communication | 36.8421 | 4 | no |
GO:0048284 | organelle fusion | 34.2105 | 5 | yes |
GO:0016050 | vesicle organization | 34.2105 | 5 | no |
GO:0051128 | regulation of cellular component organization | 31.5789 | 4 | no |
GO:0048523 | negative regulation of cellular process | 31.5789 | 4 | no |
GO:0007034 | vacuolar transport | 28.9474 | 4 | yes |
GO:0009966 | regulation of signal transduction | 28.9474 | 4 | no |
GO:0007041 | lysosomal transport | 26.3158 | 5 | yes |
GO:0008333 | endosome to lysosome transport | 26.3158 | 5 | yes |
GO:0061024 | membrane organization | 26.3158 | 4 | no |
GO:0061025 | membrane fusion | 26.3158 | 5 | no |
GO:0090174 | organelle membrane fusion | 26.3158 | 6 | no |
GO:0031323 | regulation of cellular metabolic process | 23.6842 | 4 | no |
GO:0006906 | vesicle fusion | 23.6842 | 6 | no |
GO:0022607 | cellular component assembly | 23.6842 | 4 | no |
GO:0048584 | positive regulation of response to stimulus | 23.6842 | 4 | no |
GO:0051049 | regulation of transport | 23.6842 | 4 | no |
GO:0051171 | regulation of nitrogen compound metabolic process | 23.6842 | 4 | no |
GO:0007033 | vacuole organization | 21.0526 | 5 | yes |
GO:0033043 | regulation of organelle organization | 21.0526 | 5 | no |
GO:0009894 | regulation of catabolic process | 21.0526 | 4 | no |
GO:0009893 | positive regulation of metabolic process | 21.0526 | 4 | no |
GO:0036211 | protein modification process | 21.0526 | 4 | no |
GO:0043412 | macromolecule modification | 21.0526 | 4 | no |
GO:0060627 | regulation of vesicle-mediated transport | 21.0526 | 4 | no |
GO:0051246 | regulation of protein metabolic process | 21.0526 | 5 | no |
GO:0060255 | regulation of macromolecule metabolic process | 21.0526 | 4 | no |
GO:0080090 | regulation of primary metabolic process | 21.0526 | 4 | no |
GO:0016197 | endosomal transport | 15.7895 | 4 | yes |
GO:0043933 | protein-containing complex organization | 15.7895 | 4 | yes |
GO:0022411 | cellular component disassembly | 10.5263 | 4 | yes |
GO:0032984 | protein-containing complex disassembly | 7.8947 | 5 | yes |
GO:0097352 | autophagosome maturation | 7.8947 | 6 | yes |
GO:0042144 | vacuole fusion, non-autophagic | 5.2632 | 7 | yes |
GO:0097576 | vacuole fusion | 5.2632 | 6 | yes |
Disease
Term | Name | % | Distance from top the of the tree | Annotated in VPS16_HUMAN |
---|---|---|---|---|
DOID:10595 | Charcot-Marie-Tooth disease | 5.2632 | 6 | no |
DOID:440 | neuromuscular disease | 5.2632 | 5 | no |
DOID:574 | peripheral nervous system disease | 5.2632 | 3 | no |
DOID:870 | neuropathy | 5.2632 | 4 | no |
DOID:331 | central nervous system disease | 5.2632 | 3 | no |
Uniprot ID | Details | Highest evidence | Localizing into PSD | HPA (protein expression in neurons) |
---|---|---|---|---|
VP33A_HUMAN | [view entry] [view interactions] | Low throughput | yes | no |
VPS18_HUMAN | [view entry] [view interactions] | Low throughput | yes | no |
VPS16_HUMAN | [view entry] [view interactions] | Low throughput | yes | yes |
VPS11_HUMAN | [view entry] [view interactions] | Low throughput | yes | yes |
SPE39_HUMAN | [view interactions] | Low throughput | no | yes |
TGFA1_HUMAN | [view interactions] | Low throughput | no | no |
STX17_HUMAN | [view interactions] | Low throughput | no | yes |
MON1B_HUMAN | [view interactions] | Low throughput | no | yes |
RILP_HUMAN | [view interactions] | Low throughput | no | no |
RAB5C_HUMAN | [view entry] [view interactions] | Low throughput | yes | yes |
PLK2_HUMAN | [view interactions] | Low throughput | no | yes |
UVRAG_HUMAN | [view interactions] | Low throughput | no | yes |
RAB7A_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
STX1A_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
STXB1_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
FBX7_HUMAN | [view interactions] | High throughput | no | yes |
TSR1_HUMAN | [view interactions] | High throughput | no | no |
TNPO1_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
WAPL_HUMAN | [view interactions] | High throughput | no | yes |
PSB6_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
RAB9A_HUMAN | [view interactions] | High throughput | no | yes |
IFM1_HUMAN | [view interactions] | High throughput | no | no |
IFM3_HUMAN | [view interactions] | High throughput | no | yes |
RM54_HUMAN | [view interactions] | High throughput | no | yes |
RS11_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
IPO7_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
VPS41_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
ZN800_HUMAN | [view interactions] | High throughput | no | yes |
SYHM_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
FAK1_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
RT15_HUMAN | [view interactions] | High throughput | no | yes |
ATP9A_HUMAN | [view interactions] | High throughput | no | yes |
MTOR_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
RIOK2_HUMAN | [view interactions] | High throughput | no | yes |
CFAH_HUMAN | [view interactions] | High throughput | no | no |
PIAS1_HUMAN | [view interactions] | High throughput | no | yes |
C1QT6_HUMAN | [view interactions] | High throughput | no | no |
CT55_HUMAN | [view interactions] | High throughput | no | no |
F167A_HUMAN | [view interactions] | High throughput | no | yes |
EPHA1_HUMAN | [view interactions] | High throughput | no | yes |
TCPR2_HUMAN | [view interactions] | High throughput | no | yes |
MOCS3_HUMAN | [view interactions] | High throughput | no | yes |
XPO7_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
VPS39_HUMAN | [view entry] [view interactions] | High throughput | yes | no |
DISC1_HUMAN | [view entry] [view interactions] | High throughput | yes | no |
HTRA2_HUMAN | [view interactions] | High throughput | no | yes |
IMP1L_HUMAN | [view interactions] | High throughput | no | yes |
IMP2L_HUMAN | [view interactions] | High throughput | no | yes |
CUL4B_HUMAN | [view interactions] | High throughput | no | yes |
PKHM1_HUMAN | [view interactions] | High throughput | no | yes |
CFTR_HUMAN | [view interactions] | High throughput | no | no |
BCR_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
STA5A_HUMAN | [view interactions] | High throughput | no | no |
HDAC4_HUMAN | [view interactions] | High throughput | no | yes |
CI072_HUMAN | [view interactions] | High throughput | no | no |
TGON2_HUMAN | [view interactions] | High throughput | no | yes |
EXOC8_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
GBG13_HUMAN | [view interactions] | High throughput | no | no |
ZN417_HUMAN | [view interactions] | High throughput | no | yes |
HOOK1_HUMAN | [view interactions] | High throughput | no | no |
HOOK2_HUMAN | [view interactions] | High throughput | no | yes |
HOOK3_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
AKTIP_HUMAN | [view interactions] | High throughput | no | yes |
PKNX1_HUMAN | [view interactions] | High throughput | no | yes |
NTRK1_HUMAN | [view interactions] | High throughput | no | yes |
ACV1B_HUMAN | [view interactions] | High throughput | no | no |
VPS8_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
RT17_HUMAN | [view interactions] | High throughput | no | yes |
PR40A_HUMAN | [view interactions] | High throughput | no | yes |
P33MX_HUMAN | [view interactions] | High throughput | no | yes |
TTC31_HUMAN | [view interactions] | High throughput | no | yes |
ESRP2_HUMAN | [view interactions] | High throughput | no | yes |
MTMR7_HUMAN | [view interactions] | High throughput | no | no |
LYPD4_HUMAN | [view interactions] | High throughput | no | no |
ZUP1_HUMAN | [view interactions] | High throughput | no | yes |
MYC_HUMAN | [view interactions] | High throughput | no | yes |
TIF1B_HUMAN | [view interactions] | High throughput | no | yes |
PKHA4_HUMAN | [view interactions] | High throughput | no | yes |
CDCA5_HUMAN | [view interactions] | High throughput | no | yes |
P53_HUMAN | [view interactions] | High throughput | no | no |
DUS16_HUMAN | [view interactions] | High throughput | no | yes |
PIN1_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
CXCR4_HUMAN | [view interactions] | High throughput | no | no |
VCIP1_HUMAN | [view entry] [view interactions] | High throughput | yes | no |
SRSF2_HUMAN | [view interactions] | High throughput | no | yes |
SEM4C_HUMAN | [view entry] [view interactions] | High throughput | yes | no |
STXB4_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
TBCD4_HUMAN | [view interactions] | High throughput | no | yes |
CC127_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
LRC29_HUMAN | [view interactions] | High throughput | no | no |
HSPB8_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
PMM1_HUMAN | [view interactions] | High throughput | no | yes |
ST1C4_HUMAN | [view interactions] | High throughput | no | no |
SOLH1_HUMAN | [view interactions] | High throughput | no | no |
CI163_HUMAN | [view interactions] | High throughput | no | no |
UBXN6_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
NPAS1_HUMAN | [view interactions] | High throughput | no | no |
INF2_HUMAN | [view entry] [view interactions] | High throughput | yes | yes |
D2HDH_HUMAN | [view interactions] | High throughput | no | no |
B4GT2_HUMAN | [view interactions] | High throughput | no | no |
AMZ1_HUMAN | [view interactions] | High throughput | no | no |
FBXW5_HUMAN | [view interactions] | High throughput | no | no |
CIA2A_HUMAN | [view interactions] | High throughput | no | yes |
CIB3_HUMAN | [view interactions] | High throughput | no | no |
ZRAN1_HUMAN | [view interactions] | High throughput | no | yes |
FBXW7_HUMAN | [view interactions] | High throughput | no | yes |
FBX32_HUMAN | [view interactions] | High throughput | no | no |
BRD4_HUMAN | [view interactions] | High throughput | no | yes |
FAS_HUMAN | [view entry] [view interactions] | High throughput | yes | no |
SRBP2_HUMAN | [view interactions] | High throughput | no | yes |
ATG7_HUMAN | [view interactions] | High throughput | no | yes |
ATG10_HUMAN | [view interactions] | High throughput | no | yes |
ATG3_HUMAN | [view interactions] | High throughput | no | yes |
EGFR_HUMAN | [view interactions] | High throughput | no | no |
RASK_HUMAN | [view entry] [view interactions] | High throughput | yes | no |
STX8_HUMAN | [view interactions] | Computational | no | yes |
VTI1A_HUMAN | [view interactions] | Computational | no | yes |
VAMP7_HUMAN | [view interactions] | Computational | no | yes |
RAB7B_HUMAN | [view interactions] | Computational | no | no |
STX10_HUMAN | [view interactions] | Computational | no | yes |
VP33B_HUMAN | [view interactions] | Computational | no | yes |
STX7_HUMAN | [view entry] [view interactions] | Computational | yes | yes |
STX12_HUMAN | [view entry] [view interactions] | Computational | yes | yes |
VTI1B_HUMAN | [view entry] [view interactions] | Computational | yes | yes |
RAB5A_HUMAN | [view entry] [view interactions] | Computational | yes | yes |
STX6_HUMAN | [view interactions] | Computational | no | yes |
RAB9B_HUMAN | [view interactions] | Computational | no | yes |