Features Interactions Isoform Disease Linear motifs Fingerprint Network All partners

VPS16_HUMAN

Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes which are proposed to be involved in the Rab5-to-Rab7 endosome conversion probably implicating MON1A/B, and via binding SNAREs and SNARE complexes to mediate tethering and docking events during SNARE-mediated membrane fusion. The HOPS complex is proposed to be recruited to Rab7 on the late endosomal membrane and to regulate late endocytic, phagocytic and autophagic traffic towards lysosomes. The CORVET complex is proposed to function as a Rab5 effector to mediate early endosome fusion probably in specific endosome subpopulations (PubMed, PubMed, PubMed, PubMed, PubMed). Required for recruitment of VPS33A to the HOPS complex (PubMed). Required for fusion of endosomes and autophagosomes with lysosomes; the function is dependent on its association with VPS33A but not VPS33B (PubMed). The function in autophagosome-lysosome fusion implicates STX17 but not UVRAG (PubMed). [View more on UniProt]

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Position Amino acid Mutation Disease Overlap with binding region
52 Asn Lys Dystonia30(DYT30) -

No annotated instance was found. To search for linear motifs, use the ELM prediction server.

Molecular function

Term Name % Distance from the top of the tree Annotated in VPS16_HUMAN
GO:0017076 purine nucleotide binding 21.0526 4 no
GO:0032555 purine ribonucleotide binding 21.0526 4 no
GO:0035639 purine ribonucleoside triphosphate binding 21.0526 4 no
GO:0003779 actin binding 13.1579 4 yes

Biological process

Term Name % Distance from top the of the tree Annotated in VPS16_HUMAN
GO:0008104 protein localization 63.1579 4 yes
GO:0015031 protein transport 60.5263 4 yes
GO:0071702 organic substance transport 60.5263 4 yes
GO:0071705 nitrogen compound transport 60.5263 4 yes
GO:0006996 organelle organization 55.2632 4 yes
GO:0006886 intracellular protein transport 52.6316 4 yes
GO:0016192 vesicle-mediated transport 42.1053 4 yes
GO:0048522 positive regulation of cellular process 36.8421 4 no
GO:0010646 regulation of cell communication 36.8421 4 no
GO:0048284 organelle fusion 34.2105 5 yes
GO:0016050 vesicle organization 34.2105 5 no
GO:0051128 regulation of cellular component organization 31.5789 4 no
GO:0048523 negative regulation of cellular process 31.5789 4 no
GO:0007034 vacuolar transport 28.9474 4 yes
GO:0009966 regulation of signal transduction 28.9474 4 no
GO:0007041 lysosomal transport 26.3158 5 yes
GO:0008333 endosome to lysosome transport 26.3158 5 yes
GO:0061024 membrane organization 26.3158 4 no
GO:0061025 membrane fusion 26.3158 5 no
GO:0090174 organelle membrane fusion 26.3158 6 no
GO:0031323 regulation of cellular metabolic process 23.6842 4 no
GO:0006906 vesicle fusion 23.6842 6 no
GO:0022607 cellular component assembly 23.6842 4 no
GO:0048584 positive regulation of response to stimulus 23.6842 4 no
GO:0051049 regulation of transport 23.6842 4 no
GO:0051171 regulation of nitrogen compound metabolic process 23.6842 4 no
GO:0007033 vacuole organization 21.0526 5 yes
GO:0033043 regulation of organelle organization 21.0526 5 no
GO:0009894 regulation of catabolic process 21.0526 4 no
GO:0009893 positive regulation of metabolic process 21.0526 4 no
GO:0036211 protein modification process 21.0526 4 no
GO:0043412 macromolecule modification 21.0526 4 no
GO:0060627 regulation of vesicle-mediated transport 21.0526 4 no
GO:0051246 regulation of protein metabolic process 21.0526 5 no
GO:0060255 regulation of macromolecule metabolic process 21.0526 4 no
GO:0080090 regulation of primary metabolic process 21.0526 4 no
GO:0016197 endosomal transport 15.7895 4 yes
GO:0043933 protein-containing complex organization 15.7895 4 yes
GO:0022411 cellular component disassembly 10.5263 4 yes
GO:0032984 protein-containing complex disassembly 7.8947 5 yes
GO:0097352 autophagosome maturation 7.8947 6 yes
GO:0042144 vacuole fusion, non-autophagic 5.2632 7 yes
GO:0097576 vacuole fusion 5.2632 6 yes

Disease

Term Name % Distance from top the of the tree Annotated in VPS16_HUMAN
DOID:10595 Charcot-Marie-Tooth disease 5.2632 6 no
DOID:440 neuromuscular disease 5.2632 5 no
DOID:574 peripheral nervous system disease 5.2632 3 no
DOID:870 neuropathy 5.2632 4 no
DOID:331 central nervous system disease 5.2632 3 no
Uniprot ID Details Highest evidence Localizing into PSD HPA (protein expression in neurons)
VP33A_HUMAN [view entry] [view interactions] Low throughput yes no
VPS18_HUMAN [view entry] [view interactions] Low throughput yes no
VPS16_HUMAN [view entry] [view interactions] Low throughput yes yes
VPS11_HUMAN [view entry] [view interactions] Low throughput yes yes
SPE39_HUMAN [view interactions] Low throughput no yes
TGFA1_HUMAN [view interactions] Low throughput no no
STX17_HUMAN [view interactions] Low throughput no yes
MON1B_HUMAN [view interactions] Low throughput no yes
RILP_HUMAN [view interactions] Low throughput no no
RAB5C_HUMAN [view entry] [view interactions] Low throughput yes yes
PLK2_HUMAN [view interactions] Low throughput no yes
UVRAG_HUMAN [view interactions] Low throughput no yes
RAB7A_HUMAN [view entry] [view interactions] High throughput yes yes
STX1A_HUMAN [view entry] [view interactions] High throughput yes yes
STXB1_HUMAN [view entry] [view interactions] High throughput yes yes
FBX7_HUMAN [view interactions] High throughput no yes
TSR1_HUMAN [view interactions] High throughput no no
TNPO1_HUMAN [view entry] [view interactions] High throughput yes yes
WAPL_HUMAN [view interactions] High throughput no yes
PSB6_HUMAN [view entry] [view interactions] High throughput yes yes
RAB9A_HUMAN [view interactions] High throughput no yes
IFM1_HUMAN [view interactions] High throughput no no
IFM3_HUMAN [view interactions] High throughput no yes
RM54_HUMAN [view interactions] High throughput no yes
RS11_HUMAN [view entry] [view interactions] High throughput yes yes
IPO7_HUMAN [view entry] [view interactions] High throughput yes yes
VPS41_HUMAN [view entry] [view interactions] High throughput yes yes
ZN800_HUMAN [view interactions] High throughput no yes
SYHM_HUMAN [view entry] [view interactions] High throughput yes yes
FAK1_HUMAN [view entry] [view interactions] High throughput yes yes
RT15_HUMAN [view interactions] High throughput no yes
ATP9A_HUMAN [view interactions] High throughput no yes
MTOR_HUMAN [view entry] [view interactions] High throughput yes yes
RIOK2_HUMAN [view interactions] High throughput no yes
CFAH_HUMAN [view interactions] High throughput no no
PIAS1_HUMAN [view interactions] High throughput no yes
C1QT6_HUMAN [view interactions] High throughput no no
CT55_HUMAN [view interactions] High throughput no no
F167A_HUMAN [view interactions] High throughput no yes
EPHA1_HUMAN [view interactions] High throughput no yes
TCPR2_HUMAN [view interactions] High throughput no yes
MOCS3_HUMAN [view interactions] High throughput no yes
XPO7_HUMAN [view entry] [view interactions] High throughput yes yes
VPS39_HUMAN [view entry] [view interactions] High throughput yes no
DISC1_HUMAN [view entry] [view interactions] High throughput yes no
HTRA2_HUMAN [view interactions] High throughput no yes
IMP1L_HUMAN [view interactions] High throughput no yes
IMP2L_HUMAN [view interactions] High throughput no yes
CUL4B_HUMAN [view interactions] High throughput no yes
PKHM1_HUMAN [view interactions] High throughput no yes
CFTR_HUMAN [view interactions] High throughput no no
BCR_HUMAN [view entry] [view interactions] High throughput yes yes
STA5A_HUMAN [view interactions] High throughput no no
HDAC4_HUMAN [view interactions] High throughput no yes
CI072_HUMAN [view interactions] High throughput no no
TGON2_HUMAN [view interactions] High throughput no yes
EXOC8_HUMAN [view entry] [view interactions] High throughput yes yes
GBG13_HUMAN [view interactions] High throughput no no
ZN417_HUMAN [view interactions] High throughput no yes
HOOK1_HUMAN [view interactions] High throughput no no
HOOK2_HUMAN [view interactions] High throughput no yes
HOOK3_HUMAN [view entry] [view interactions] High throughput yes yes
AKTIP_HUMAN [view interactions] High throughput no yes
PKNX1_HUMAN [view interactions] High throughput no yes
NTRK1_HUMAN [view interactions] High throughput no yes
ACV1B_HUMAN [view interactions] High throughput no no
VPS8_HUMAN [view entry] [view interactions] High throughput yes yes
RT17_HUMAN [view interactions] High throughput no yes
PR40A_HUMAN [view interactions] High throughput no yes
P33MX_HUMAN [view interactions] High throughput no yes
TTC31_HUMAN [view interactions] High throughput no yes
ESRP2_HUMAN [view interactions] High throughput no yes
MTMR7_HUMAN [view interactions] High throughput no no
LYPD4_HUMAN [view interactions] High throughput no no
ZUP1_HUMAN [view interactions] High throughput no yes
MYC_HUMAN [view interactions] High throughput no yes
TIF1B_HUMAN [view interactions] High throughput no yes
PKHA4_HUMAN [view interactions] High throughput no yes
CDCA5_HUMAN [view interactions] High throughput no yes
P53_HUMAN [view interactions] High throughput no no
DUS16_HUMAN [view interactions] High throughput no yes
PIN1_HUMAN [view entry] [view interactions] High throughput yes yes
CXCR4_HUMAN [view interactions] High throughput no no
VCIP1_HUMAN [view entry] [view interactions] High throughput yes no
SRSF2_HUMAN [view interactions] High throughput no yes
SEM4C_HUMAN [view entry] [view interactions] High throughput yes no
STXB4_HUMAN [view entry] [view interactions] High throughput yes yes
TBCD4_HUMAN [view interactions] High throughput no yes
CC127_HUMAN [view entry] [view interactions] High throughput yes yes
LRC29_HUMAN [view interactions] High throughput no no
HSPB8_HUMAN [view entry] [view interactions] High throughput yes yes
PMM1_HUMAN [view interactions] High throughput no yes
ST1C4_HUMAN [view interactions] High throughput no no
SOLH1_HUMAN [view interactions] High throughput no no
CI163_HUMAN [view interactions] High throughput no no
UBXN6_HUMAN [view entry] [view interactions] High throughput yes yes
NPAS1_HUMAN [view interactions] High throughput no no
INF2_HUMAN [view entry] [view interactions] High throughput yes yes
D2HDH_HUMAN [view interactions] High throughput no no
B4GT2_HUMAN [view interactions] High throughput no no
AMZ1_HUMAN [view interactions] High throughput no no
FBXW5_HUMAN [view interactions] High throughput no no
CIA2A_HUMAN [view interactions] High throughput no yes
CIB3_HUMAN [view interactions] High throughput no no
ZRAN1_HUMAN [view interactions] High throughput no yes
FBXW7_HUMAN [view interactions] High throughput no yes
FBX32_HUMAN [view interactions] High throughput no no
BRD4_HUMAN [view interactions] High throughput no yes
FAS_HUMAN [view entry] [view interactions] High throughput yes no
SRBP2_HUMAN [view interactions] High throughput no yes
ATG7_HUMAN [view interactions] High throughput no yes
ATG10_HUMAN [view interactions] High throughput no yes
ATG3_HUMAN [view interactions] High throughput no yes
EGFR_HUMAN [view interactions] High throughput no no
RASK_HUMAN [view entry] [view interactions] High throughput yes no
STX8_HUMAN [view interactions] Computational no yes
VTI1A_HUMAN [view interactions] Computational no yes
VAMP7_HUMAN [view interactions] Computational no yes
RAB7B_HUMAN [view interactions] Computational no no
STX10_HUMAN [view interactions] Computational no yes
VP33B_HUMAN [view interactions] Computational no yes
STX7_HUMAN [view entry] [view interactions] Computational yes yes
STX12_HUMAN [view entry] [view interactions] Computational yes yes
VTI1B_HUMAN [view entry] [view interactions] Computational yes yes
RAB5A_HUMAN [view entry] [view interactions] Computational yes yes
STX6_HUMAN [view interactions] Computational no yes
RAB9B_HUMAN [view interactions] Computational no yes