Features Interactions Isoform Disease Linear motifs Fingerprint Network All partners

SNX6_HUMAN

Involved in several stages of intracellular trafficking. Interacts with membranes phosphatidylinositol 3,4-bisphosphate and/or phosphatidylinositol 4,5-bisphosphate (Probable). Acts in part as component of the retromer membrane-deforming SNX-BAR subcomplex (PubMed). The SNX-BAR retromer mediates retrograde transport of cargo proteins from endosomes to the trans-Golgi network (TGN) and is involved in endosome-to-plasma membrane transport for cargo protein recycling. The SNX-BAR subcomplex functions to deform the donor membrane into a tubular profile called endosome-to-TGN transport carrier (ETC) (Probable). Does not have in vitro vesicle-to-membrane remodeling activity (PubMed). Involved in retrograde endosome-to-TGN transport of lysosomal enzyme receptor IGF2R (PubMed). May function as link between transport vesicles and dynactin (Probable). Negatively regulates retrograde transport of BACE1 from the cell surface to the trans-Golgi network (PubMed). Involved in E-cadherin sorting and degradation; inhibits PIP5K1C isoform 3-mediated E-cadherin degradation (PubMed). In association with GIT1 involved in EGFR degradation. Promotes lysosomal degradation of CDKN1B . May contribute to transcription regulation (Probable). [View more on UniProt]

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No data found.

No annotated instance was found. To search for linear motifs, use the ELM prediction server.

Molecular function

Term Name % Distance from the top of the tree Annotated in SNX6_HUMAN
GO:0017076 purine nucleotide binding 31.8841 4 no
GO:0032555 purine ribonucleotide binding 30.4348 4 no
GO:0035639 purine ribonucleoside triphosphate binding 30.4348 4 no
GO:0046872 metal ion binding 20.2899 4 no
GO:0016462 pyrophosphatase activity 20.2899 5 no
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 20.2899 4 no
GO:0035091 phosphatidylinositol binding 18.8406 4 yes
GO:0042803 protein homodimerization activity 15.9420 4 yes
GO:0005126 cytokine receptor binding 4.3478 4 yes
GO:0034452 dynactin binding 2.8986 4 yes

Biological process

Term Name % Distance from top the of the tree Annotated in SNX6_HUMAN
GO:0048522 positive regulation of cellular process 65.2174 4 no
GO:0048523 negative regulation of cellular process 53.6232 4 yes
GO:0010646 regulation of cell communication 52.1739 4 yes
GO:0060255 regulation of macromolecule metabolic process 52.1739 4 yes
GO:0080090 regulation of primary metabolic process 52.1739 4 yes
GO:0051171 regulation of nitrogen compound metabolic process 49.2754 4 yes
GO:0051128 regulation of cellular component organization 47.8261 4 no
GO:0008104 protein localization 47.8261 4 yes
GO:0031323 regulation of cellular metabolic process 47.8261 4 yes
GO:0009966 regulation of signal transduction 46.3768 4 yes
GO:0051049 regulation of transport 44.9275 4 no
GO:0016192 vesicle-mediated transport 40.5797 4 yes
GO:0051246 regulation of protein metabolic process 40.5797 5 yes
GO:0071702 organic substance transport 39.1304 4 yes
GO:0009893 positive regulation of metabolic process 37.6812 4 no
GO:0071705 nitrogen compound transport 37.6812 4 yes
GO:0010604 positive regulation of macromolecule metabolic process 36.2319 5 no
GO:0051173 positive regulation of nitrogen compound metabolic process 34.7826 5 no
GO:0006996 organelle organization 33.3333 4 no
GO:0015031 protein transport 33.3333 4 yes
GO:0009892 negative regulation of metabolic process 31.8841 4 yes
GO:0010468 regulation of gene expression 31.8841 5 yes
GO:0051247 positive regulation of protein metabolic process 30.4348 6 no
GO:1902531 regulation of intracellular signal transduction 30.4348 5 no
GO:0010605 negative regulation of macromolecule metabolic process 30.4348 5 yes
GO:0031325 positive regulation of cellular metabolic process 28.9855 5 no
GO:0051050 positive regulation of transport 28.9855 4 no
GO:0048584 positive regulation of response to stimulus 28.9855 4 no
GO:0009894 regulation of catabolic process 28.9855 4 yes
GO:0022607 cellular component assembly 27.5362 4 no
GO:0044087 regulation of cellular component biogenesis 27.5362 4 no
GO:0010941 regulation of cell death 27.5362 4 yes
GO:0051172 negative regulation of nitrogen compound metabolic process 27.5362 5 yes
GO:0051130 positive regulation of cellular component organization 26.0870 5 no
GO:0010647 positive regulation of cell communication 26.0870 5 no
GO:0023056 positive regulation of signaling 26.0870 4 no
GO:0006886 intracellular protein transport 26.0870 4 yes
GO:0009889 regulation of biosynthetic process 26.0870 4 yes
GO:0016197 endosomal transport 26.0870 4 yes
GO:0031326 regulation of cellular biosynthetic process 26.0870 5 yes
GO:0060627 regulation of vesicle-mediated transport 24.6377 4 no
GO:0051240 positive regulation of multicellular organismal process 24.6377 4 no
GO:0043067 regulation of programmed cell death 24.6377 5 yes
GO:0071310 cellular response to organic substance 24.6377 4 yes
GO:0031344 regulation of cell projection organization 23.1884 5 no
GO:0120035 regulation of plasma membrane bounded cell projection organization 23.1884 6 no
GO:0009967 positive regulation of signal transduction 23.1884 5 no
GO:0010648 negative regulation of cell communication 23.1884 5 yes
GO:0019219 regulation of nucleobase-containing compound metabolic process 23.1884 5 yes
GO:0023057 negative regulation of signaling 23.1884 4 yes
GO:0031324 negative regulation of cellular metabolic process 23.1884 5 yes
GO:0042981 regulation of apoptotic process 23.1884 6 yes
GO:0048585 negative regulation of response to stimulus 23.1884 4 yes
GO:0010556 regulation of macromolecule biosynthetic process 21.7391 5 yes
GO:0019220 regulation of phosphate metabolic process 21.7391 6 yes
GO:0031399 regulation of protein modification process 21.7391 6 yes
GO:0042325 regulation of phosphorylation 21.7391 7 yes
GO:0051174 regulation of phosphorus metabolic process 21.7391 5 yes
GO:0031401 positive regulation of protein modification process 20.2899 7 no
GO:0032880 regulation of protein localization 20.2899 5 no
GO:0060341 regulation of cellular localization 20.2899 4 no
GO:0051726 regulation of cell cycle 20.2899 4 no
GO:0007010 cytoskeleton organization 20.2899 5 no
GO:0033043 regulation of organelle organization 20.2899 5 no
GO:0048878 chemical homeostasis 20.2899 4 no
GO:0030030 cell projection organization 20.2899 4 no
GO:0051094 positive regulation of developmental process 20.2899 4 no
GO:0080134 regulation of response to stress 20.2899 4 no
GO:0009968 negative regulation of signal transduction 20.2899 5 yes
GO:0031329 regulation of cellular catabolic process 20.2899 5 yes
GO:0051252 regulation of RNA metabolic process 20.2899 5 yes
GO:0060548 negative regulation of cell death 20.2899 5 yes
GO:0016482 cytosolic transport 18.8406 4 yes
GO:0051248 negative regulation of protein metabolic process 18.8406 6 yes
GO:2001141 regulation of RNA biosynthetic process 17.3913 6 yes
GO:0001932 regulation of protein phosphorylation 17.3913 7 yes
GO:0006355 regulation of DNA-templated transcription 17.3913 6 yes
GO:0010243 response to organonitrogen compound 17.3913 4 yes
GO:0042147 retrograde transport, endosome to Golgi 17.3913 5 yes
GO:1901701 cellular response to oxygen-containing compound 17.3913 4 yes
GO:1903506 regulation of nucleic acid-templated transcription 17.3913 7 yes
GO:0043066 negative regulation of apoptotic process 15.9420 7 yes
GO:0043069 negative regulation of programmed cell death 15.9420 6 yes
GO:1901699 cellular response to nitrogen compound 14.4928 4 yes
GO:0043549 regulation of kinase activity 13.0435 5 yes
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 13.0435 6 yes
GO:0051338 regulation of transferase activity 13.0435 4 yes
GO:0009890 negative regulation of biosynthetic process 11.5942 5 yes
GO:0010506 regulation of autophagy 11.5942 6 yes
GO:0031327 negative regulation of cellular biosynthetic process 11.5942 6 yes
GO:0045859 regulation of protein kinase activity 11.5942 6 yes
GO:0051253 negative regulation of RNA metabolic process 11.5942 6 yes
GO:0071417 cellular response to organonitrogen compound 11.5942 4 yes
GO:0010558 negative regulation of macromolecule biosynthetic process 10.1449 6 yes
GO:0016241 regulation of macroautophagy 10.1449 7 yes
GO:0031400 negative regulation of protein modification process 10.1449 7 yes
GO:1901652 response to peptide 10.1449 4 yes
GO:0010563 negative regulation of phosphorus metabolic process 8.6957 6 yes
GO:0042326 negative regulation of phosphorylation 8.6957 8 yes
GO:0045892 negative regulation of DNA-templated transcription 8.6957 7 yes
GO:0045936 negative regulation of phosphate metabolic process 8.6957 7 yes
GO:1902679 negative regulation of RNA biosynthetic process 8.6957 7 yes
GO:1903507 negative regulation of nucleic acid-templated transcription 8.6957 8 yes
GO:0001933 negative regulation of protein phosphorylation 7.2464 8 yes
GO:1901214 regulation of neuron death 7.2464 5 yes
GO:1901215 negative regulation of neuron death 7.2464 6 yes
GO:1901653 cellular response to peptide 7.2464 5 yes
GO:1904645 response to amyloid-beta 5.7971 5 yes
GO:1904646 cellular response to amyloid-beta 5.7971 6 yes
GO:0043523 regulation of neuron apoptotic process 5.7971 6 yes
GO:0042058 regulation of epidermal growth factor receptor signaling pathway 4.3478 6 yes
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway 4.3478 7 yes
GO:0043086 negative regulation of catalytic activity 4.3478 4 yes
GO:0043524 negative regulation of neuron apoptotic process 4.3478 7 yes
GO:1901184 regulation of ERBB signaling pathway 4.3478 5 yes
GO:1901185 negative regulation of ERBB signaling pathway 4.3478 6 yes
GO:0007176 regulation of epidermal growth factor-activated receptor activity 2.8986 4 yes
GO:0050730 regulation of peptidyl-tyrosine phosphorylation 2.8986 8 yes
GO:0061097 regulation of protein tyrosine kinase activity 2.8986 7 yes

Disease

Term Name % Distance from top the of the tree Annotated in SNX6_HUMAN
DOID:0050700 cardiomyopathy 4.3478 4 no
DOID:0060036 intrinsic cardiomyopathy 4.3478 5 no
DOID:114 heart disease 4.3478 3 no
DOID:2843 long QT syndrome 4.3478 6 no
DOID:1289 neurodegenerative disease 4.3478 4 no
DOID:331 central nervous system disease 4.3478 3 no
DOID:12377 spinal muscular atrophy 2.8986 6 no
DOID:231 motor neuron disease 2.8986 5 no
DOID:332 amyotrophic lateral sclerosis 2.8986 6 no
DOID:10273 heart conduction disease 2.8986 4 no
DOID:612 primary immunodeficiency disease 2.8986 3 no
Uniprot ID Details Highest evidence Localizing into PSD HPA (protein expression in neurons)
TCTP_HUMAN [view entry] [view interactions] Low throughput yes yes
SNX1_HUMAN [view entry] [view interactions] Low throughput yes yes
MTR1L_HUMAN [view interactions] Low throughput no no
DCTN1_HUMAN [view entry] [view interactions] Low throughput yes yes
AT1A1_HUMAN [view entry] [view interactions] Low throughput yes no
PIM1_HUMAN [view interactions] Low throughput no yes
GIT1_HUMAN [view entry] [view interactions] Low throughput yes yes
BRMS1_HUMAN [view interactions] Low throughput no yes
PTPRR_HUMAN [view interactions] High throughput no yes
RASH_HUMAN [view entry] [view interactions] High throughput yes no
RASK_HUMAN [view entry] [view interactions] High throughput yes no
RASN_HUMAN [view entry] [view interactions] High throughput yes no
CHCH1_HUMAN [view interactions] High throughput no yes
RN183_HUMAN [view interactions] High throughput no no
DNJB2_HUMAN [view entry] [view interactions] High throughput yes yes
DNJB6_HUMAN [view entry] [view interactions] High throughput yes yes
DNJ5B_HUMAN [view interactions] High throughput no no
DNJC5_HUMAN [view interactions] High throughput no yes
LRC61_HUMAN [view interactions] High throughput no yes
KAPCA_HUMAN [view entry] [view interactions] High throughput yes yes
ARF6_HUMAN [view entry] [view interactions] High throughput yes yes
ATG12_HUMAN [view interactions] High throughput no yes
CK052_HUMAN [view interactions] High throughput no no
CXAR_HUMAN [view interactions] High throughput no yes
DIRA3_HUMAN [view interactions] High throughput no yes
RCAS1_HUMAN [view interactions] High throughput no yes
ELOV5_HUMAN [view interactions] High throughput no yes
ERGI1_HUMAN [view interactions] High throughput no yes
FLOT1_HUMAN [view entry] [view interactions] High throughput yes yes
CXA1_HUMAN [view entry] [view interactions] High throughput yes yes
GORS1_HUMAN [view interactions] High throughput no yes
DHB11_HUMAN [view interactions] High throughput no yes
3BHS7_HUMAN [view interactions] High throughput no no
LAMP2_HUMAN [view interactions] High throughput no yes
LAMP3_HUMAN [view interactions] High throughput no no
LTOR1_HUMAN [view entry] [view interactions] High throughput yes yes
LCK_HUMAN [view entry] [view interactions] High throughput yes no
MARCS_HUMAN [view entry] [view interactions] High throughput yes yes
NDC80_HUMAN [view interactions] High throughput no no
OCLN_HUMAN [view interactions] High throughput no no
PEX3_HUMAN [view interactions] High throughput no yes
PROF1_HUMAN [view entry] [view interactions] High throughput yes yes
PHB2_HUMAN [view entry] [view interactions] High throughput yes yes
PERI_HUMAN [view entry] [view interactions] High throughput yes no
RB11A_HUMAN [view entry] [view interactions] High throughput yes yes
RAB35_HUMAN [view entry] [view interactions] High throughput yes yes
RAB4A_HUMAN [view entry] [view interactions] High throughput yes no
RAB5A_HUMAN [view entry] [view interactions] High throughput yes yes
RAB5C_HUMAN [view entry] [view interactions] High throughput yes yes
RHOB_HUMAN [view entry] [view interactions] High throughput yes no
SEP10_HUMAN [view interactions] High throughput no yes
STX6_HUMAN [view interactions] High throughput no yes
STX7_HUMAN [view entry] [view interactions] High throughput yes yes
ZFPL1_HUMAN [view interactions] High throughput no yes
VP33A_HUMAN [view entry] [view interactions] High throughput yes no
FURIN_HUMAN [view interactions] High throughput no yes
NBR1_HUMAN [view interactions] High throughput no yes
TOLIP_HUMAN [view entry] [view interactions] High throughput yes yes
COIL_HUMAN [view interactions] High throughput no yes
DISC1_HUMAN [view entry] [view interactions] High throughput yes no
NDEL1_HUMAN [view entry] [view interactions] High throughput yes yes
MIPT3_HUMAN [view interactions] High throughput no yes
SNX2_HUMAN [view entry] [view interactions] High throughput yes no
GOLM1_HUMAN [view interactions] High throughput no yes
SNR27_HUMAN [view interactions] High throughput no yes
C102B_HUMAN [view interactions] High throughput no yes
POTB3_HUMAN [view interactions] High throughput no no
VAPB_HUMAN [view entry] [view interactions] High throughput yes yes
DYT2B_HUMAN [view interactions] High throughput no no
FIBB_HUMAN [view entry] [view interactions] High throughput yes no
HENMT_HUMAN [view interactions] High throughput no yes
UBP47_HUMAN [view interactions] High throughput no yes
F221A_HUMAN [view interactions] High throughput no yes
TRML2_HUMAN [view interactions] High throughput no no
SNX32_HUMAN [view interactions] High throughput no no
CAST3_HUMAN [view interactions] High throughput no no
TEAD4_HUMAN [view interactions] High throughput no no
CMKMT_HUMAN [view interactions] High throughput no no
TSYL1_HUMAN [view interactions] High throughput no yes
BACE1_HUMAN [view interactions] High throughput no yes
SNX7_HUMAN [view interactions] High throughput no yes
TGON2_HUMAN [view interactions] High throughput no yes
JUN_HUMAN [view interactions] High throughput no yes
G3BP1_HUMAN [view interactions] High throughput no yes
CSK22_HUMAN [view entry] [view interactions] High throughput yes no
A4_HUMAN [view entry] [view interactions] High throughput yes yes
CI072_HUMAN [view interactions] High throughput no no
OPTN_HUMAN [view interactions] High throughput no yes
TNIK_HUMAN [view entry] [view interactions] High throughput yes yes
FMR1_HUMAN [view entry] [view interactions] High throughput yes yes
BET1_HUMAN [view interactions] High throughput no no
EZRI_HUMAN [view entry] [view interactions] High throughput yes no
LAMP1_HUMAN [view interactions] High throughput no yes
RAB9A_HUMAN [view interactions] High throughput no yes
CATA_HUMAN [view entry] [view interactions] High throughput yes no
KCNJ2_HUMAN [view entry] [view interactions] High throughput yes yes
EPHA5_HUMAN [view interactions] High throughput no no
FGFR1_HUMAN [view interactions] High throughput no yes
VGFR3_HUMAN [view interactions] High throughput no yes
IGF1R_HUMAN [view entry] [view interactions] High throughput yes yes
NTRK3_HUMAN [view entry] [view interactions] High throughput yes yes
RET_HUMAN [view interactions] High throughput no yes
BRCA1_HUMAN [view interactions] High throughput no yes
TEX11_HUMAN [view interactions] High throughput no no
SNX4_HUMAN [view entry] [view interactions] High throughput yes yes
BMR1B_HUMAN [view interactions] High throughput no no
AVR2B_HUMAN [view interactions] High throughput no no
ACVL1_HUMAN [view interactions] High throughput no yes
TGFR2_HUMAN [view interactions] High throughput no no
TGFR1_HUMAN [view interactions] High throughput no no
PGFRA_HUMAN [view interactions] High throughput no no
INSR_HUMAN [view interactions] High throughput no yes
EGFR_HUMAN [view interactions] High throughput no no
LEPR_HUMAN [view interactions] High throughput no no
ELAV1_HUMAN [view entry] [view interactions] High throughput yes yes
EED_HUMAN [view interactions] High throughput no yes
UBP46_HUMAN [view entry] [view interactions] High throughput yes yes
DYN3_HUMAN [view entry] [view interactions] High throughput yes no
FA43A_HUMAN [view interactions] High throughput no no
CCNL2_HUMAN [view interactions] High throughput no yes
IF16_HUMAN [view interactions] High throughput no no
HERC2_HUMAN [view interactions] High throughput no yes
MTM1_HUMAN [view interactions] High throughput no yes
EPB42_HUMAN [view entry] [view interactions] High throughput yes no
HAVR1_HUMAN [view interactions] High throughput no yes
ZDH18_HUMAN [view interactions] High throughput no yes
ZDH23_HUMAN [view interactions] High throughput no no
EYA2_HUMAN [view interactions] High throughput no yes
PKHA4_HUMAN [view interactions] High throughput no yes
PKCB1_HUMAN [view interactions] High throughput no yes
ZN687_HUMAN [view interactions] High throughput no yes
DVL2_HUMAN [view interactions] High throughput no yes
TEX28_HUMAN [view interactions] High throughput no no
IBPL1_HUMAN [view interactions] High throughput no no
PAEP_HUMAN [view interactions] High throughput no no
ZBTB3_HUMAN [view interactions] High throughput no yes
SPAT2_HUMAN [view interactions] High throughput no yes
BMP6_HUMAN [view interactions] High throughput no no
ATM_HUMAN [view interactions] High throughput no yes
NRBP_HUMAN [view interactions] High throughput no yes
PRUN2_HUMAN [view entry] [view interactions] High throughput yes yes
TBA4A_HUMAN [view entry] [view interactions] High throughput yes yes
MTCL1_HUMAN [view interactions] High throughput no yes
HAUS5_HUMAN [view interactions] High throughput no yes
HCLS1_HUMAN [view interactions] High throughput no no
BRCA2_HUMAN [view interactions] High throughput no no
STAC2_HUMAN [view interactions] High throughput no no
INP5K_HUMAN [view interactions] High throughput no no
BIRC6_HUMAN [view entry] [view interactions] High throughput yes yes
HERC1_HUMAN [view interactions] High throughput no no
DB136_HUMAN [view interactions] High throughput no no
KLHL1_HUMAN [view interactions] High throughput no no
S12A3_HUMAN [view interactions] High throughput no no
MYOME_HUMAN [view interactions] High throughput no no
SPTCS_HUMAN [view interactions] High throughput no yes
NTNG1_HUMAN [view interactions] High throughput no no
WIF1_HUMAN [view entry] [view interactions] High throughput yes no
ATG4A_HUMAN [view interactions] High throughput no yes
PKHG7_HUMAN [view interactions] High throughput no no
CBCO1_HUMAN [view interactions] High throughput no no
TMPSC_HUMAN [view interactions] High throughput no no
NPAS1_HUMAN [view interactions] High throughput no no
TFR1_HUMAN [view interactions] High throughput no yes
SNX27_HUMAN [view entry] [view interactions] High throughput yes no
RHOJ_HUMAN [view interactions] High throughput no yes
CALM2_HUMAN [view entry] [view interactions] High throughput yes yes
CALM3_HUMAN [view entry] [view interactions] High throughput yes yes
CALM1_HUMAN [view entry] [view interactions] High throughput yes yes
ESR1_HUMAN [view interactions] High throughput no no
OGT1_HUMAN [view entry] [view interactions] High throughput yes yes
PHLP1_HUMAN [view interactions] High throughput no yes
TF2AA_HUMAN [view interactions] High throughput no yes
H33_HUMAN [view interactions] High throughput no yes
RTF1_HUMAN [view interactions] High throughput no yes
AN32E_HUMAN [view interactions] High throughput no yes
ACPH_HUMAN [view interactions] High throughput no yes
ATG7_HUMAN [view interactions] High throughput no yes
VATC1_HUMAN [view entry] [view interactions] High throughput yes yes
NIBA2_HUMAN [view interactions] High throughput no no
PAWR_HUMAN [view interactions] High throughput no yes
GLYC_HUMAN [view interactions] High throughput no no
GLYM_HUMAN [view entry] [view interactions] High throughput yes yes
STAT1_HUMAN [view entry] [view interactions] High throughput yes no
TSNAX_HUMAN [view interactions] High throughput no yes
VPS29_HUMAN [view entry] [view interactions] High throughput yes yes
VPS35_HUMAN [view entry] [view interactions] High throughput yes yes
TSN_HUMAN [view interactions] High throughput no yes
IMDH2_HUMAN [view interactions] High throughput no yes
PCID2_HUMAN [view interactions] High throughput no yes
SNX5_HUMAN [view entry] [view interactions] High throughput yes yes
RAB7A_HUMAN [view entry] [view interactions] High throughput yes yes
VP26A_HUMAN [view entry] [view interactions] High throughput yes no
ANFY1_HUMAN [view entry] [view interactions] High throughput yes yes
TBCD5_HUMAN [view interactions] High throughput no yes
SNX12_HUMAN [view entry] [view interactions] Computational yes yes
SNX3_HUMAN [view entry] [view interactions] Computational yes no
VP26B_HUMAN [view interactions] Computational no yes